PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026086.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 340aa    MW: 38356.8 Da    PI: 10.2918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026086.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-1217931799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                +++ + a  ++ +  + ++  + ++ g++W+v++   + +++++l+ GW eF  a+g+ +g fvv++++g  ++ l++k+f++
  Do026086.1 17 RISHELAGCFDAS--SAREALVASPFGKVWRVEV--GRDGDGTFLGHGWAEFLAAHGIGVGWFVVLRHEG--GGVLTIKAFDT 93
                5555555333433..44578999***********..99*99**************************765..77779998875 PP

2B358.61.1e-18247330186
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                 ++k+++++++l++ +l+lp kf+ ++g + ++++ l+    s rsW+v+     +++  y+l+kGW  F+k+n+Lk gD ++F +++
  Do026086.1 247 WIKKEVTAYMLEH-LLSLPVKFCHSIGFQRACTIRLKTAMDSTRSWQVRG--LVYKKVcYLLGKGWTYFCKENRLKKGDLCTFNVIE 330
                 789999*****98.5***********99988865555555777*******..55555559***********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.812194IPR003340B3 DNA binding domain
SMARTSM010190.0019494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-13692IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13693IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-9692No hitNo description
PfamPF023622.0E-101492IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-16244340IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-14247339IPR003340B3 DNA binding domain
SMARTSM010191.1E-5248339IPR003340B3 DNA binding domain
CDDcd100171.11E-9248326No hitNo description
Gene3DG3DSA:2.40.330.101.3E-17249339IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.406261340IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVKQLKVLRP PSLHKLRISH ELAGCFDASS AREALVASPF GKVWRVEVGR DGDGTFLGHG  60
WAEFLAAHGI GVGWFVVLRH EGGGVLTIKA FDTGFYIKEF AAPAAGLTLG SSKGVYCKPQ  120
FLRIIQQDFM EKMIIPARFV KNYVTEECLS LSAPLASDVL LLRYEGNMVF KFKVFGLNGC  180
QKLLKNHNTG IQQNCVKQES PFRIKKRKVD NERESSEKEK RPKRSMTSVN KASSQNGPGY  240
QIGPPSWIKK EVTAYMLEHL LSLPVKFCHS IGFQRACTIR LKTAMDSTRS WQVRGLVYKK  300
VCYLLGKGWT YFCKENRLKK GDLCTFNVIE TTLWHVVISR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.11e-158PREDICTED: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS742e-84Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLK3YCY51e-158K3YCY5_SETIT; Uncharacterized protein
STRINGSi012086m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187